Genotyping of Phytophthora infestans in Eastern Africa Reveals a Dominating Invasive European Lineage.
Identifieur interne : 000492 ( Main/Exploration ); précédent : 000491; suivant : 000493Genotyping of Phytophthora infestans in Eastern Africa Reveals a Dominating Invasive European Lineage.
Auteurs : Anne W. Njoroge [Kenya, Suède] ; Björn Andersson [Suède] ; Alison K. Lees [Royaume-Uni] ; Collins Mutai ; Gregory A. Forbes [Pérou] ; Jonathan E. Yuen [Suède] ; Roger PelleSource :
- Phytopathology [ 0031-949X ] ; 2019.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Phytophthora infestans.
- pathogénicité : Phytophthora infestans.
- Europe, Génotype, Kenya, Maladies des plantes, Ouganda, Phylogéographie, Tanzanie.
- Wicri :
English descriptors
- KwdEn :
- MESH :
- geographic : Europe, Kenya, Tanzania, Uganda.
- genetics : Phytophthora infestans.
- pathogenicity : Phytophthora infestans.
- Genotype, Phylogeography, Plant Diseases.
Abstract
Strains of Phytophthora infestans, the pathogen causing late blight of potato and tomato, are thought to be moved around the world through infected planting material. Since its first appearance in 1941, late blight has caused important losses to potato production in the eastern-Africa region (EAR). In the current study, the genetic structure of the population in Kenya, Uganda, Tanzania, Burundi, and Rwanda was characterized using 12-plex microsatellite markers with the aim of testing the hypothesis that a strain originating from Europe, 2_A1, has recently dominated the population in EAR. Analyses of 1,093 potato and 165 tomato samples collected between 2013 and 2016 revealed the dominance on potato in all countries of the 2_A1 clonal lineage. On tomato, a host-specialized form of the US-1 lineage appears to persist in Rwanda, Uganda, and Tanzania whereas, in Kenya, most samples from tomato (72.5%) were 2_A1. The US-1 lineage in Tanzania had two private alleles at the Pi02 marker, suggesting a possible independent introduction into the region. US-1 had higher genetic variability than 2_A1, consistent with the earlier establishment of the former. Continuous tracking of P. infestans population changes should help identify new virulent and aggressive strains, which would inform strategic disease management options.
DOI: 10.1094/PHYTO-07-18-0234-R
PubMed: 30253119
Affiliations:
Links toward previous steps (curation, corpus...)
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Njoroge</name><affiliation wicri:level="1"><nlm:affiliation>1 International Potato Center (CIP), PO Box 25171-00603 Nairobi, Kenya.</nlm:affiliation><country xml:lang="fr">Kenya</country><wicri:regionArea>1 International Potato Center (CIP), PO Box 25171-00603 Nairobi</wicri:regionArea><wicri:noRegion>PO Box 25171-00603 Nairobi</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>2 Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology, PO Box 7026, S-750 07 Uppsala, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>2 Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology, PO Box 7026, S-750 07 Uppsala</wicri:regionArea><wicri:noRegion>S-750 07 Uppsala</wicri:noRegion></affiliation></author><author><name sortKey="Andersson, Bjorn" sort="Andersson, Bjorn" uniqKey="Andersson B" first="Björn" last="Andersson">Björn Andersson</name><affiliation wicri:level="1"><nlm:affiliation>2 Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology, PO Box 7026, S-750 07 Uppsala, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>2 Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology, PO Box 7026, S-750 07 Uppsala</wicri:regionArea><wicri:noRegion>S-750 07 Uppsala</wicri:noRegion></affiliation></author><author><name sortKey="Lees, Alison K" sort="Lees, Alison K" uniqKey="Lees A" first="Alison K" last="Lees">Alison K. Lees</name><affiliation wicri:level="1"><nlm:affiliation>3 Cell and Molecular Sciences, The James Hutton Institute, Dundee, DD2 5DA, United Kingdom.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>3 Cell and Molecular Sciences, The James Hutton Institute, Dundee, DD2 5DA</wicri:regionArea><wicri:noRegion>DD2 5DA</wicri:noRegion></affiliation></author><author><name sortKey="Mutai, Collins" sort="Mutai, Collins" uniqKey="Mutai C" first="Collins" last="Mutai">Collins Mutai</name><affiliation><nlm:affiliation>4 Biosciences eastern and central Africa-International Livestock Research Institute Hub, PO Box 30709-00100, Nairobi, Kenya; and.</nlm:affiliation><wicri:noCountry code="subField">Kenya; and</wicri:noCountry></affiliation></author><author><name sortKey="Forbes, Gregory A" sort="Forbes, Gregory A" uniqKey="Forbes G" first="Gregory A" last="Forbes">Gregory A. Forbes</name><affiliation wicri:level="1"><nlm:affiliation>5 CIP, PO Box 1558, Lima 12, Peru.</nlm:affiliation><country xml:lang="fr">Pérou</country><wicri:regionArea>5 CIP, PO Box 1558, Lima 12</wicri:regionArea><wicri:noRegion>Lima 12</wicri:noRegion></affiliation></author><author><name sortKey="Yuen, Jonathan E" sort="Yuen, Jonathan E" uniqKey="Yuen J" first="Jonathan E" last="Yuen">Jonathan E. Yuen</name><affiliation wicri:level="1"><nlm:affiliation>2 Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology, PO Box 7026, S-750 07 Uppsala, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>2 Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology, PO Box 7026, S-750 07 Uppsala</wicri:regionArea><wicri:noRegion>S-750 07 Uppsala</wicri:noRegion></affiliation></author><author><name sortKey="Pelle, Roger" sort="Pelle, Roger" uniqKey="Pelle R" first="Roger" last="Pelle">Roger Pelle</name><affiliation><nlm:affiliation>4 Biosciences eastern and central Africa-International Livestock Research Institute Hub, PO Box 30709-00100, Nairobi, Kenya; and.</nlm:affiliation><wicri:noCountry code="subField">Kenya; and</wicri:noCountry></affiliation></author></analytic><series><title level="j">Phytopathology</title><idno type="ISSN">0031-949X</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Europe (MeSH)</term><term>Genotype (MeSH)</term><term>Kenya (MeSH)</term><term>Phylogeography (MeSH)</term><term>Phytophthora infestans (genetics)</term><term>Phytophthora infestans (pathogenicity)</term><term>Plant Diseases (MeSH)</term><term>Tanzania (MeSH)</term><term>Uganda (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Europe (MeSH)</term><term>Génotype (MeSH)</term><term>Kenya (MeSH)</term><term>Maladies des plantes (MeSH)</term><term>Ouganda (MeSH)</term><term>Phylogéographie (MeSH)</term><term>Phytophthora infestans (génétique)</term><term>Phytophthora infestans (pathogénicité)</term><term>Tanzanie (MeSH)</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Europe</term><term>Kenya</term><term>Tanzania</term><term>Uganda</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Phytophthora infestans</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Phytophthora infestans</term></keywords><keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Phytophthora infestans</term></keywords><keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Phytophthora infestans</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genotype</term><term>Phylogeography</term><term>Plant Diseases</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Europe</term><term>Génotype</term><term>Kenya</term><term>Maladies des plantes</term><term>Ouganda</term><term>Phylogéographie</term><term>Tanzanie</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Kenya</term><term>Ouganda</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Strains of Phytophthora infestans, the pathogen causing late blight of potato and tomato, are thought to be moved around the world through infected planting material. Since its first appearance in 1941, late blight has caused important losses to potato production in the eastern-Africa region (EAR). In the current study, the genetic structure of the population in Kenya, Uganda, Tanzania, Burundi, and Rwanda was characterized using 12-plex microsatellite markers with the aim of testing the hypothesis that a strain originating from Europe, 2_A1, has recently dominated the population in EAR. Analyses of 1,093 potato and 165 tomato samples collected between 2013 and 2016 revealed the dominance on potato in all countries of the 2_A1 clonal lineage. On tomato, a host-specialized form of the US-1 lineage appears to persist in Rwanda, Uganda, and Tanzania whereas, in Kenya, most samples from tomato (72.5%) were 2_A1. The US-1 lineage in Tanzania had two private alleles at the Pi02 marker, suggesting a possible independent introduction into the region. US-1 had higher genetic variability than 2_A1, consistent with the earlier establishment of the former. Continuous tracking of P. infestans population changes should help identify new virulent and aggressive strains, which would inform strategic disease management options.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">30253119</PMID><DateCompleted><Year>2019</Year><Month>08</Month><Day>21</Day></DateCompleted><DateRevised><Year>2019</Year><Month>08</Month><Day>21</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0031-949X</ISSN><JournalIssue CitedMedium="Print"><Volume>109</Volume><Issue>4</Issue><PubDate><Year>2019</Year><Month>Apr</Month></PubDate></JournalIssue><Title>Phytopathology</Title><ISOAbbreviation>Phytopathology</ISOAbbreviation></Journal><ArticleTitle>Genotyping of Phytophthora infestans in Eastern Africa Reveals a Dominating Invasive European Lineage.</ArticleTitle><Pagination><MedlinePgn>670-680</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1094/PHYTO-07-18-0234-R</ELocationID><Abstract><AbstractText>Strains of Phytophthora infestans, the pathogen causing late blight of potato and tomato, are thought to be moved around the world through infected planting material. Since its first appearance in 1941, late blight has caused important losses to potato production in the eastern-Africa region (EAR). In the current study, the genetic structure of the population in Kenya, Uganda, Tanzania, Burundi, and Rwanda was characterized using 12-plex microsatellite markers with the aim of testing the hypothesis that a strain originating from Europe, 2_A1, has recently dominated the population in EAR. Analyses of 1,093 potato and 165 tomato samples collected between 2013 and 2016 revealed the dominance on potato in all countries of the 2_A1 clonal lineage. On tomato, a host-specialized form of the US-1 lineage appears to persist in Rwanda, Uganda, and Tanzania whereas, in Kenya, most samples from tomato (72.5%) were 2_A1. The US-1 lineage in Tanzania had two private alleles at the Pi02 marker, suggesting a possible independent introduction into the region. US-1 had higher genetic variability than 2_A1, consistent with the earlier establishment of the former. Continuous tracking of P. infestans population changes should help identify new virulent and aggressive strains, which would inform strategic disease management options.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Njoroge</LastName><ForeName>Anne W</ForeName><Initials>AW</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-3464-9345</Identifier><AffiliationInfo><Affiliation>1 International Potato Center (CIP), PO Box 25171-00603 Nairobi, Kenya.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>2 Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology, PO Box 7026, S-750 07 Uppsala, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Andersson</LastName><ForeName>Björn</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>2 Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology, PO Box 7026, S-750 07 Uppsala, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lees</LastName><ForeName>Alison K</ForeName><Initials>AK</Initials><AffiliationInfo><Affiliation>3 Cell and Molecular Sciences, The James Hutton Institute, Dundee, DD2 5DA, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mutai</LastName><ForeName>Collins</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>4 Biosciences eastern and central Africa-International Livestock Research Institute Hub, PO Box 30709-00100, Nairobi, Kenya; and.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Forbes</LastName><ForeName>Gregory A</ForeName><Initials>GA</Initials><AffiliationInfo><Affiliation>5 CIP, PO Box 1558, Lima 12, Peru.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yuen</LastName><ForeName>Jonathan E</ForeName><Initials>JE</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-2944-9226</Identifier><AffiliationInfo><Affiliation>2 Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology, PO Box 7026, S-750 07 Uppsala, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pelle</LastName><ForeName>Roger</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>4 Biosciences eastern and central Africa-International Livestock Research Institute Hub, PO Box 30709-00100, Nairobi, Kenya; and.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>02</Month><Day>15</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Phytopathology</MedlineTA><NlmUniqueID>9427222</NlmUniqueID><ISSNLinking>0031-949X</ISSNLinking></MedlineJournalInfo><MeshHeadingList><MeshHeading><DescriptorName UI="D005060" MajorTopicYN="N" Type="Geographic">Europe</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007630" MajorTopicYN="N" Type="Geographic">Kenya</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D058974" MajorTopicYN="N">Phylogeography</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D055750" MajorTopicYN="Y">Phytophthora infestans</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013636" MajorTopicYN="N" Type="Geographic">Tanzania</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014454" MajorTopicYN="N" Type="Geographic">Uganda</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>9</Month><Day>27</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>8</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>9</Month><Day>26</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30253119</ArticleId><ArticleId IdType="doi">10.1094/PHYTO-07-18-0234-R</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Kenya</li><li>Pérou</li><li>Royaume-Uni</li><li>Suède</li></country></list><tree><noCountry><name sortKey="Mutai, Collins" sort="Mutai, Collins" uniqKey="Mutai C" first="Collins" last="Mutai">Collins Mutai</name><name sortKey="Pelle, Roger" sort="Pelle, Roger" uniqKey="Pelle R" first="Roger" last="Pelle">Roger Pelle</name></noCountry><country name="Kenya"><noRegion><name sortKey="Njoroge, Anne W" sort="Njoroge, Anne W" uniqKey="Njoroge A" first="Anne W" last="Njoroge">Anne W. Njoroge</name></noRegion></country><country name="Suède"><noRegion><name sortKey="Njoroge, Anne W" sort="Njoroge, Anne W" uniqKey="Njoroge A" first="Anne W" last="Njoroge">Anne W. Njoroge</name></noRegion><name sortKey="Andersson, Bjorn" sort="Andersson, Bjorn" uniqKey="Andersson B" first="Björn" last="Andersson">Björn Andersson</name><name sortKey="Yuen, Jonathan E" sort="Yuen, Jonathan E" uniqKey="Yuen J" first="Jonathan E" last="Yuen">Jonathan E. Yuen</name></country><country name="Royaume-Uni"><noRegion><name sortKey="Lees, Alison K" sort="Lees, Alison K" uniqKey="Lees A" first="Alison K" last="Lees">Alison K. Lees</name></noRegion></country><country name="Pérou"><noRegion><name sortKey="Forbes, Gregory A" sort="Forbes, Gregory A" uniqKey="Forbes G" first="Gregory A" last="Forbes">Gregory A. Forbes</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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